PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01417.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 334aa    MW: 37085.6 Da    PI: 7.5447
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01417.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.11.1e-681072722154
                   DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel......... 78 
                              r+ +++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re          
  Rsa1.0_01417.1_g00003.1 107 RQASMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHRSSSSRETQNAKRLREAngggdnddk 192
                              67889********************************************************9999988888888888888888876 PP

                   DUF702  79 .kskkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                               +  +  ++ +t++++a+s++ +e+s+ lP+evss+ vfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqG++e
  Rsa1.0_01417.1_g00003.1 193 dRRGSGGSALATRVVNANSNSGFEVSQnLPPEVSSPVVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPDE 272
                              6666778889999*********998877*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.2E-63110271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-28112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.0E-25221270IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGFFYLGGR DNNKQDHHQV DKSNYLYLYK DEIYNTNKGF EIWPPQYFQE QQQQQQQHVT  60
APANFYSFGM VSSGSSSSNN NNNNNRSRSL HFNVVPDHEP GGFTVTRQAS MNCQDCGNQA  120
KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LASLQHRSSS SRETQNAKRL  180
REANGGGDND DKDRRGSGGS ALATRVVNAN SNSGFEVSQN LPPEVSSPVV FRCVRVSSIE  240
EDEDDQEYAY QTAVNIGGHI FKGILYDQGP DEDHQRNLLA PTATTTNAEE TPAKTAVTVA  300
GSNNTGSILD PSALYPVQLN SYISGTPFFT PTRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104702.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLM4CHR60.0M4CHR6_BRARP; Uncharacterized protein
STRINGBra003749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-155SHI-related sequence 5